PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03938.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 285aa    MW: 33113.1 Da    PI: 9.5921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03938.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.75.8e-4671342128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                               pGfrFhPt+eel+++yLk+   gk+ ++ evi  +diy+++PwdLp+  + +e+ewyfF++r++k+  g r++r+t++gyWkatg
  Rsa1.0_03938.1_g00002.1   7 LPGFRFHPTEEELLDFYLKNMFYGKRSKV-EVIGFLDIYRHDPWDLPRLSTIGEREWYFFVPRERKQGDGGRPSRITDKGYWKATG 91 
                              59************************999.99***************7777799******************************** PP

                      NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +d++++s    ++ vglkktLvfy+grap g+ktdWvm+e+r+
  Rsa1.0_03938.1_g00002.1  92 SDRKIISLsePRRMVGLKKTLVFYTGRAPGGTKTDWVMNEFRM 134
                              *****997556677***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.9156152IPR003441NAC domain
SuperFamilySSF1019419.81E-547152IPR003441NAC domain
PfamPF023652.3E-238134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSKEIQLPGF RFHPTEEELL DFYLKNMFYG KRSKVEVIGF LDIYRHDPWD LPRLSTIGER  60
EWYFFVPRER KQGDGGRPSR ITDKGYWKAT GSDRKIISLS EPRRMVGLKK TLVFYTGRAP  120
GGTKTDWVMN EFRMPDHCTL PKNVVLCKIY RKATSLKVME QRADMEAKMK QTRPSSPLSS  180
CETNSFAGKE EDLMMTSFPF PQAEAMKEPN HILTLQEHNE NAKIKRKQRE AERNEPSSSL  240
KLPSGDLPLP ELLLPKQGFE LGQDQFFSIS PWLQNLTPII NLLYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-44815522171NAC domain-containing protein 19
3swm_B1e-44815522171NAC domain-containing protein 19
3swm_C1e-44815522171NAC domain-containing protein 19
3swm_D1e-44815522171NAC domain-containing protein 19
3swp_A1e-44815522171NAC domain-containing protein 19
3swp_B1e-44815522171NAC domain-containing protein 19
3swp_C1e-44815522171NAC domain-containing protein 19
3swp_D1e-44815522171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382700.0KF738270.1 Brassica napus NAC transcription factor 36 (NAC36.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596007.10.0PREDICTED: NAC transcription factor 29-like
RefseqXP_013748869.10.0PREDICTED: NAC transcription factor 29-like isoform X1
RefseqXP_013748870.10.0PREDICTED: NAC transcription factor 29-like isoform X2
TrEMBLA0A0D3D3K50.0A0A0D3D3K5_BRAOL; Uncharacterized protein
TrEMBLA0A078C5870.0A0A078C587_BRANA; BnaC07g06080D protein
STRINGBra002018.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-159NAC domain containing protein 36